Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2565Integral membrane protein. (241 aa)    
Predicted Functional Partners:
Lery_2564
Hypothetical protein.
       0.732
Lery_1699
Coiled-coil protein.
 
     0.694
ybiA_2
Swarming motility protein YbiA.
  
     0.684
ybiA_1
Swarming motility protein YbiA.
  
     0.669
sodB
Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.655
Lery_1860
Sensor histidine kinase/response regulator LuxN.
  
    0.631
Lery_2000
Hypothetical protein.
  
    0.592
Lery_0397
Nucleoside-diphosphate sugar epimerase.
  
    0.587
Lery_1272
Hypothetical protein.
  
     0.566
Lery_0855
Hypothetical protein.
  
     0.555
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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