STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2566phytanoyl-CoA dioxygenase. (286 aa)    
Predicted Functional Partners:
Lery_2567
D-alanyl-D-alanine dipeptidase.
       0.627
Lery_1668
Polyketide synthase module.
  
 0.613
Lery_1999
Glutamate synthetase.
    
 0.534
Lery_2565
Integral membrane protein.
       0.523
lysAC
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.503
Lery_2564
Hypothetical protein.
       0.498
Lery_2569
Cytokinin oxidase.
  
  0.439
Lery_0363
Hypothetical protein.
  
     0.432
Lery_0878
Polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.420
Lery_0321
Hypothetical protein.
  
     0.415
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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