Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
potBSpermidine/putrescine ABC transporter permease PotB. (274 aa)    
Predicted Functional Partners:
potD
Spermidine/putrescine-binding periplasmic protein precursor potD (SPBP); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.999
potC
Spermidine/putrescine ABC transporter permease PotC.
 0.999
potA
Spermidine/putrescine ABC transporter, ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.999
ugpC
Sn-glycerol-3-phosphate transport, ATP binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.753
Lery_2648
Neurogenic locus notch like protein precursor.
       0.747
Lery_1239
Potassium efflux system KefA.
    
 0.531
ugpA
Sn-glycerol-3-phosphate transmembrane ABC transporter.
     
  0.513
Lery_2649
Transmembrane protein.
       0.483
comA
DNA uptake/competence protein ComA.
     
 0.480
abcT3
ABC transporter ATP binding protein.
    
  0.477
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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