acdA protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

acdA

Short chain-specific acyl CoA dehydrogenase. (384 aa)

Predicted Functional Partners:

yfcX

0.990

fadB

0.989

Lery_2680

0.982

etfA

0.973

Lery_2681

0.962

Lery_1668

0.953

etfB

0.930

pta_1

0.834

pta_2

0.834

atoB

0.828

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_1668	Lery_2680	Lery_1668	Lery_2680	Polyketide synthase module.	3-hydroxyisobutyryl-CoA hydrolase.	0.973
Lery_1668	Lery_2681	Lery_1668	Lery_2681	Polyketide synthase module.	Enoyl-CoA hydratase/carnithine racemase.	0.973
Lery_1668	acdA	Lery_1668	Lery_2679	Polyketide synthase module.	Short chain-specific acyl CoA dehydrogenase.	0.953
Lery_1668	atoB	Lery_1668	Lery_0050	Polyketide synthase module.	Acyl CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.876
Lery_1668	etfA	Lery_1668	Lery_2083	Polyketide synthase module.	Electron transfer flavoprotein subunit alpha.	0.928
Lery_1668	etfB	Lery_1668	Lery_2084	Polyketide synthase module.	Electron transfer flavoprotein subunit beta.	0.709
Lery_1668	fadB	Lery_1668	Lery_1142	Polyketide synthase module.	3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.997
Lery_1668	pta_1	Lery_1668	Lery_0565	Polyketide synthase module.	Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.	0.874
Lery_1668	pta_2	Lery_1668	Lery_2443	Polyketide synthase module.	Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.	0.874
Lery_1668	yfcX	Lery_1668	Lery_1745	Polyketide synthase module.	Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.997
Lery_2680	Lery_1668	Lery_2680	Lery_1668	3-hydroxyisobutyryl-CoA hydrolase.	Polyketide synthase module.	0.973
Lery_2680	Lery_2681	Lery_2680	Lery_2681	3-hydroxyisobutyryl-CoA hydrolase.	Enoyl-CoA hydratase/carnithine racemase.	0.958
Lery_2680	acdA	Lery_2680	Lery_2679	3-hydroxyisobutyryl-CoA hydrolase.	Short chain-specific acyl CoA dehydrogenase.	0.982
Lery_2680	atoB	Lery_2680	Lery_0050	3-hydroxyisobutyryl-CoA hydrolase.	Acyl CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.920
Lery_2680	etfA	Lery_2680	Lery_2083	3-hydroxyisobutyryl-CoA hydrolase.	Electron transfer flavoprotein subunit alpha.	0.732
Lery_2680	etfB	Lery_2680	Lery_2084	3-hydroxyisobutyryl-CoA hydrolase.	Electron transfer flavoprotein subunit beta.	0.642
Lery_2680	fadB	Lery_2680	Lery_1142	3-hydroxyisobutyryl-CoA hydrolase.	3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.739
Lery_2680	pta_1	Lery_2680	Lery_0565	3-hydroxyisobutyryl-CoA hydrolase.	Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.	0.831
Lery_2680	pta_2	Lery_2680	Lery_2443	3-hydroxyisobutyryl-CoA hydrolase.	Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.	0.831
Lery_2680	yfcX	Lery_2680	Lery_1745	3-hydroxyisobutyryl-CoA hydrolase.	Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.764