STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2688Flavin reductase like domain protein. (215 aa)    
Predicted Functional Partners:
Lery_1668
Polyketide synthase module.
  
 
 0.819
Lery_1926
Nitroreductase.
  
 
 0.766
ribF
Riboflavin biosynthesis protein RibF (riboflavin kinase/FMN adenylyltransferase); Belongs to the ribF family.
    
  0.694
Lery_2904
Electron transferring flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
    
 0.661
Lery_1004
YcaC related amidohydrolase.
 
 
 0.654
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
    
  0.652
Lery_2689
Methyltransferase.
       0.608
abcT3
ABC transporter ATP binding protein.
  
 
 0.602
fadH
2,4-dienoyl-CoA reductase FadH1.
    
 0.594
Lery_2754
CDP-6-deoxy-delta-3,4-glucoseen reductase.
  
 
  0.589
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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