Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lery_2701Poly(3-hydroxybutyrate) depolymerase. (438 aa)    
Predicted Functional Partners:
Lery_2511
Poly-beta-hydroxybutyrate polymerase.
 
  
 0.956
phbC
Polyhydroxyalkanoic synthase.
 
  
 0.955
phaR
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.626
Lery_2732
Esterase.
  
     0.576
Lery_2700
Hypothetical protein.
       0.516
Lery_2441
Hypothetical protein.
 
  
 0.455
Lery_0683
Sporulation domain-containing protein.
     
  0.431
Lery_1684
Patatin-like phospholipase.
  
     0.430
Lery_0386
Alpha-beta hydrolase family transporter esterase.
  
     0.425
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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