STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2800Alkane monooxygenase. (349 aa)    
Predicted Functional Partners:
Lery_0436
Sterol desaturase-related protein.
 
 
 0.878
Lery_2432
Oxidoreductase, FAD-binding protein.
  
 
 0.863
fadH
2,4-dienoyl-CoA reductase FadH1.
  
   
 0.784
bioI
Biotin biosynthesis cytochrome P450.
 
  
 0.664
Lery_2904
Electron transferring flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
   
 
 0.636
rsmI
Tetrapyrrole (corrin/porphyrin) methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.625
Lery_2801
Metalloproteinase-like protein.
       0.616
Lery_2802
Hypothetical protein.
       0.580
Lery_0789
Putative inner membrane protein.
  
     0.559
Lery_1668
Polyketide synthase module.
 
  
 0.545
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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