Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lery_2805NADH-dependent flavin oxidoreductase, Oye family. (350 aa)    
Predicted Functional Partners:
Lery_2806
Transcriptional regulator, ArsR family.
     
 0.787
etfB
Electron transfer flavoprotein subunit beta.
  
 0.780
etfA
Electron transfer flavoprotein subunit alpha.
   
 0.734
Lery_2432
Oxidoreductase, FAD-binding protein.
    
 0.720
Lery_1668
Polyketide synthase module.
  
 
 0.684
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.679
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.679
Lery_1926
Nitroreductase.
    
 0.548
tldD
TldD protein.
      
 0.533
Lery_0890
Choline monooxygenase.
    
  0.515
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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