Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
xerCTyrosine recombinase XerC; Belongs to the 'phage' integrase family. (422 aa)    
Predicted Functional Partners:
xerD
Tyrosine recombinase XerD.
     0.969
Lery_2874
Integrase; Belongs to the 'phage' integrase family.
 
    
0.905
Lery_2187
Putative conjugative transfer protein TraI.
  
   
 0.693
Lery_2877
Hypothetical protein.
 
 
   0.664
Lery_2199
Putative conjugative transfer protein TraC.
  
     0.592
Lery_2190
Putative sex pilus assembly and mating pair protein TraG.
  
     0.560
Lery_2192
Putative conjugative transfer protein TrbB.
  
     0.543
Lery_2432
Oxidoreductase, FAD-binding protein.
  
     0.514
Lery_1099
Phosphate acetyl/butaryl transferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
  0.511
Lery_2175
DEAD/DEAH box helicase.
  
     0.508
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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