Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msbA1ABC transporter family carbohydrate exporter. (600 aa)    
Predicted Functional Partners:
msbA2
ABC transporter family carbohydrate exporter.
 
  
 
0.967
sce6823
NRPS/PKS hybrid.
  
 
 0.618
sce6528
ABC transporter, ATP-binding protein.
  
 
 
 0.598
sce3192
Polyketide synthase; Family membership.
  
 0.473
sce0020
Hypothetical protein predicted by Glimmer/Critica.
       0.449
sce8314
Putative periplasmic substrate-binding protein; Family membership.
  
   
 0.429
potA2
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
     
0.426
sce5634
ABC transporter, ATP-binding protein; Family membership.
  
 
 
 0.415
hscA
Putative Heat shock protein Hsp70; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.
  
  0.408
sce4286
Conserved hypothetical membrane protein.
  
 
 0.406
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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