Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msbA2ABC transporter family carbohydrate exporter. (598 aa)    
Predicted Functional Partners:
msbA1
ABC transporter family carbohydrate exporter.
 
  
 
0.967
sce0020
Hypothetical protein predicted by Glimmer/Critica.
       0.693
sce6823
NRPS/PKS hybrid.
  
 
 0.618
sce2420
Hsp70 heat shock protein; Family membership; Belongs to the heat shock protein 70 family.
  
  0.476
hscA
Putative Heat shock protein Hsp70; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.
  
  0.475
sce3192
Polyketide synthase; Family membership.
  
 0.473
dnaK1
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  0.438
trmA
RNA methyltransferase; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
 
 
 0.438
dnaK2
Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  0.428
asnS
asparaginyl-tRNA synthetase; High confidence in function and specificity.
  
   0.404
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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