Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kpHPseudouridylate synthase. (200 aa)    
Predicted Functional Partners:
micA
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.763
sce1510
Putative transposase; Family membership.
  
     0.672
sce2039
Glutamyl endopeptidase; Family membership; Belongs to the peptidase S1B family.
  
     0.663
sce8208
CDP-diacylglycerol--serine O-phosphatidyltransferase.
 
     0.579
sce7690
Hypothetical protein.
  
     0.558
sce2557
Putative secreted protein.
  
     0.556
sce5321
Hypothetical protein predicted by Glimmer/Critica.
  
     0.555
sce3465
Putative secreted protein.
  
     0.553
sce9133
Putative secreted protein; Family membership.
  
     0.518
sce5359
Hypothetical protein predicted by Glimmer/Critica.
  
     0.514
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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