Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbp1Penicillin-binding protein. (848 aa)    
Predicted Functional Partners:
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
 
 
0.949
sce0331
Hypothetical protein; Function unclear.
  
  
 
0.902
ftsW
Cell division protein; High confidence in function and specificity; Belongs to the SEDS family.
  
   
 0.749
murC1
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
   
 0.732
ftsI2
Peptidoglycan glycosyltransferase; High confidence in function and specificity.
  
 
 
 0.722
sce8860
Membrane proteins related to metalloendopeptidases.
  
   
 0.709
ftsI1
Peptidoglycan glycosyltransferase; High confidence in function and specificity.
  
 
 
 0.695
sce7403
Peptidase; Family membership.
  
   
 0.693
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
  
   
 0.687
rodA
Rod shape-determining protein RodA; High confidence in function and specificity; Belongs to the SEDS family.
  
   
 0.683
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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