Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0043Peptidase_M14 domain-containing protein; Unnamed protein product; Family membership. (330 aa)    
Predicted Functional Partners:
speB1
Agmatinase; Family membership; Belongs to the arginase family.
       0.483
plsC1
1-acylglycerol-3-phosphate O-acyltransferase; Family membership.
       0.483
sce0046
Predicted acetyltransferase; Family membership.
       0.474
sce0041
Hypothetical protein predicted by Glimmer/Critica.
       0.463
sce0042
Protein kinase; Family membership.
       0.463
sce0533
Putative secreted trypsin-like serine protease.
  
     0.420
sce0201
Putative trypsin precursor.
  
     0.405
sce4490
Putative secreted protein.
  
     0.400
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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