STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0064Hypothetical protein predicted by Glimmer/Critica. (291 aa)    
Predicted Functional Partners:
sce1559
Putative secreted protein.
  
     0.673
sce2743
Putative secreted protein.
 
     0.654
yhjM
Cellulase; Family membership.
 
 
   0.650
sce4015
Hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.650
sce0065
Hypothetical protein predicted by Glimmer/Critica.
       0.645
cbhA
Cellulose 1,4-beta-cellobiosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase family 6.
 
 
 
 0.634
sce5309
Putative glycosyl hydrolase; Family membership.
 
 
   0.627
sce3118
Hypothetical protein; Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.613
xynD
Endo-1,4-beta-xylanase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.572
abfB
Alpha-L-arabinofuranosidase precursor; High confidence in function and specificity.
 
 
   0.567
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.