Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0070Outer membrane porin precursor; Family membership. (608 aa)    
Predicted Functional Partners:
sdr
Cell surface SD repeat protein precursor.
     0.795
sce1867
Putative outer membrane protein; Family membership.
  
     0.648
sce3630
WD-repeat protein.
  
   0.558
sce9136
Vitamin K-dependent gamma-carboxylase; High confidence in function and specificity.
  
    0.524
sce9312
tonB family protein; Family membership.
  
     0.515
sce5891
Gamma-glutamyl carboxylase.
  
    0.508
sce0648
ompA-family exported protein; Family membership.
  
     0.462
sce0068
Predicted chaperonin (heat shock protein 33); Family membership.
       0.439
sce0977
Hypothetical protein; FOG: TPR repeat.
  
 
   0.439
sce7985
Hypothetical protein.
  
     0.408
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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