Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0078ATP-dependent deoxyribonuclease subunit A; Family membership; Belongs to the helicase family. UvrD subfamily. (1254 aa)    
Predicted Functional Partners:
sce0197
Hypothetical protein.
 
 
 0.984
sce2840
Hypothetical protein; COG: ATP-dependent nuclease, subunit B.
 
 
 0.953
recD
Putative exodeoxyribonuclease V; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 0.931
sce3521
Hypothetical protein.
  
 
 0.850
sce7413
Putative membrane protein.
  
     0.728
trmA
RNA methyltransferase; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
     0.676
sce2839
Exodeoxyribonuclease V beta chain; High confidence in function and specificity; Belongs to the helicase family. UvrD subfamily.
  
  
 
0.666
sce5810
Probable alkaline serine protease; Family membership.
  
     0.655
sce3164
Hypothetical protein predicted by Glimmer/Critica.
  
     0.633
sce6974
Hypothetical protein.
  
     0.628
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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