Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sce0081Putative membrane protein. (305 aa)    
Predicted Functional Partners:
sce5737
Uncharacterized protein possibly involved in aromatic compounds catabolism.
    
 0.914
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
    
 0.911
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
  
  
 
0.911
chlG
Putative Octaprenyltransferase; Family membership.
 
  
 
0.909
sce3016
Hypothetical protein; Predicted thioesterase.
    
 0.905
ispB
Trans-octaprenyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
    
 0.827
hemH1
Ferrochelatase.
       0.773
sce0082
Hypothetical protein predicted by Glimmer/Critica.
       0.737
sce6067
Porin P precursor (Outer membrane protein D1); Family membership.
  
     0.678
sce8912
Transcriptional regulator, AraC family; Family membership.
  
     0.673
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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