STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0089Transcriptional regulator, AraC family; Family membership. (346 aa)    
Predicted Functional Partners:
sce2240
Transcriptional regulator, AraC family; Family membership.
  
     0.741
sce3627
Transcriptional regulator, AraC family; Specificity unclear.
  
     0.727
sce6647
Probable transcriptional regulator.
  
     0.690
sce1222
Putative araC-like transcription regulator.
  
     0.647
sce0709
Transcriptional regulator, AraC family; Family membership.
  
     0.633
sce8850
Transcriptional regulator, AraC family; Family membership.
  
     0.628
sce0732
Transcriptional regulator, AraC family; Family membership.
  
     0.604
sce6362
Transcriptional regulator, AraC family; Family membership.
  
     0.601
sce5287
Transcriptional regulator, AraC family; Family membership.
  
     0.598
sce1536
Transcriptional regulator, AraC family; Family membership.
  
     0.575
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.