STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0099Probable PPE family protein. (138 aa)    
Predicted Functional Partners:
sce0098
Putative Carboxymethylenebutenolidase.
  
    0.777
sce0100
Putative Carboxymethylenebutenolidase.
  
    0.777
tauD1
Putative Taurine dioxygenase; Family membership.
       0.773
sce0495
Hypothetical protein predicted by Glimmer/Critica.
  
     0.771
sce5887
Hypothetical protein predicted by Glimmer/Critica; Family membership.
  
     0.743
sce8646
Hypothetical protein predicted by Glimmer/Critica.
  
     0.701
sce9147
Hypothetical protein.
  
     0.575
sce3298
PE-PGRS family protein.
  
     0.545
sce4532
Hypothetical protein; FOG: WD40 repeat.
  
     0.515
sce2207
Slit homolog 3 protein precursor (Slit-3).
  
     0.504
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.