STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0105Uncharacterized low-complexity proteins. (697 aa)    
Predicted Functional Partners:
sce0106
Uncharacterized low-complexity proteins.
 
    
0.842
sce0103
Hypothetical protein.
 
     0.809
sce5662
Hypothetical protein.
 
     0.708
sce4930
Hypothetical protein.
 
     0.700
sce0109
Uncharacterized protein conserved in bacteria.
 
     0.680
sce8471
Hypothetical protein.
  
     0.667
sce0104
Hypothetical protein predicted by Glimmer/Critica.
       0.634
sce0107
COG: Uncharacterized protein conserved in bacteria.
       0.607
sce0108
COG: Uncharacterized protein conserved in bacteria.
       0.601
sce0102
Hypothetical protein.
       0.548
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.