STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0109Uncharacterized protein conserved in bacteria. (531 aa)    
Predicted Functional Partners:
sce0103
Hypothetical protein.
 
    0.841
sce0108
COG: Uncharacterized protein conserved in bacteria.
 
    0.813
sce0107
COG: Uncharacterized protein conserved in bacteria.
 
    0.798
sce3105
Uncharacterized protein conserved in bacteria.
  
     0.775
sce4107
Uncharacterized protein conserved in bacteria.
  
     0.775
sce4930
Hypothetical protein.
 
    0.775
sce7464
Uncharacterized protein conserved in bacteria.
  
     0.775
sce8030
Uncharacterized protein conserved in bacteria.
  
     0.775
sce8032
Hypothetical protein predicted by Glimmer/Critica.
  
     0.775
sce8146
Uncharacterized protein conserved in bacteria.
  
     0.775
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.