Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0111Conserved exported carbohydrate-binding protein,Rhs family; Function unclear. (773 aa)    
Predicted Functional Partners:
sce3545
Conserved carbohydrate-binding protein, Rhs family; Family membership.
 
     0.789
sce0112
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce7825
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.718
sce7678
Hypothetical carbohydrate-binding protein, Rhs family; Family membership.
  
     0.714
sce3516
Rhs family protein; Family membership.
  
     0.712
sce6981
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.677
sce6980
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.609
sce6982
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.589
sce2011
Hypothetical protein predicted by Glimmer/Critica.
  
     0.569
sce7826
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.554
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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