STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0163Hypothetical protein. (254 aa)    
Predicted Functional Partners:
sce0162
Hypothetical protein; Belongs to the UPF0312 family.
     
 0.758
sce6612
Pirin-related protein; Belongs to the pirin family.
 
  
 0.654
sce6567
Pirin-related protein; Belongs to the pirin family.
 
  
 0.585
sce8347
Pirin-related protein; Belongs to the pirin family.
 
  
 0.583
sce3383
Pirin-related protein; Belongs to the pirin family.
 
  
 0.541
sce0164
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
       0.472
sce6912
Thiosulfate sulfurtransferase; High confidence in function and specificity.
 
    
 0.456
ribA4
Riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.442
sce0161
Transcriptional regulator, AraC family; Family membership.
       0.406
azoR
Putative [Acyl-carrier-protein] phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity.; Belongs to the azoreductase type 1 family.
  
  
 0.406
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.