Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0174Hypothetical protein; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (230 aa)    
Predicted Functional Partners:
sce7103
Hypothetical protein; Family membership.
  
 
   0.568
sce8803
Nicotianamine synthase, putative.
  
     0.553
sce0173
Uncharacterized conserved protein contains double-stranded beta-helix domain.
 
     0.552
sce7672
Hypothetical protein.
  
     0.521
cadA
FAD-binding monooxygenase, PheA/TfdB family; Family membership.
  
   0.504
sce8961
Putative oxidoreductase.
  
   0.490
sce8588
Putative UDP-glucose 4-epimerase; Family membership.
  
     0.483
sce0175
Transcriptional regulator, IclR family; Family membership.
     
 0.477
ilvE1
Branched-chain-amino-acid transaminase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
     
 0.462
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.455
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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