Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0181Organic hydroperoxide resistance protein; High confidence in function and specificity. (141 aa)    
Predicted Functional Partners:
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); High confidence in function and specificity.
   
    0.826
sce3268
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Family membership.
   
    0.826
dps
Probable DNA-binding stress protein, Dps family; High confidence in function and specificity; Belongs to the Dps family.
  
  
 0.755
sce7884
Hypothetical DNA-binding ferritin-like protein,Dps family; Family membership; Belongs to the Dps family.
  
  
 0.755
sce0440
Hypothetical protein predicted by Glimmer/Critica; Belongs to the UPF0337 (CsbD) family.
  
  
 0.741
sce0093
Hypothetical protein predicted by Glimmer/Critica; Belongs to the Dps family.
  
  
 0.612
sce2137
Hypothetical protein.
   
  
 0.565
ytbE
Prostaglandin-E; High confidence in function and specificity.
  
  
 0.562
sce4756
Aldo/keto reductase.
  
  
 0.562
dkgB
Putative 2,5-didehydrogluconate reductase; Family membership.
  
  
 0.562
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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