STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0198Hypothetical protein. (276 aa)    
Predicted Functional Partners:
sce3131
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.783
sce5585
Hypothetical protein.
 
     0.749
sce1326
Hypothetical protein.
  
     0.742
sce8416
Hypothetical protein.
 
     0.719
sce4561
Unknown protein.
  
     0.714
sce8253
Hypothetical protein predicted by Glimmer/Critica.
 
     0.710
sce4309
Hybrid sensory histidine kinase; Family membership.
  
  
 0.696
sce4190
Uncharacterized protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.689
sce2345
Hypothetical protein predicted by Glimmer/Critica.
 
     0.680
sce4360
Protein of unknown function.
  
     0.674
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.