STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0201Putative trypsin precursor. (317 aa)    
Predicted Functional Partners:
sce7740
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.889
sce2306
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.881
sce8315
Hypothetical secreted peptidase.
 
   
 0.775
sce5846
Peptidase_M14 domain-containing protein; Unnamed protein product; Family membership.
  
 
 
 0.759
sce6803
Probable serine protease; Family membership.
  
     0.734
sce8389
Hypothetical protein predicted by Glimmer/Critica.
  
     0.716
sce7189
Putative exported alanine/arginine/valine-rich protein.
  
 
   0.706
sce0255
Hypothetical protein.
  
     0.693
sce2836
Putative membrane protein.
  
 
   0.670
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.670
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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