Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0226Hypothetical protein; Predicted metal-dependent hydrolase of the TIM-barrel fold. (384 aa)    
Predicted Functional Partners:
sce0227
Conserved domain protein.
 
     0.758
sce5176
Conserved hypothetical protein DUF181.
 
     0.553
sce0793
Two-component hisidine kinase; Family membership.
  
     0.478
sce0223
Sigma-54 factor interaction domain-containing protein; Unnamed protein product; Family membership.
 
     0.466
sce0224
Protein kinase; Family membership.
       0.463
sce0225
Hypothetical protein predicted by Glimmer/Critica.
       0.463
sce6644
Hypothetical protein predicted by Glimmer/Critica.
  
     0.456
sce4944
Putative monooxygenase; Specificity unclear.
  
    0.425
sce7812
Hypothetical protein predicted by Glimmer/Critica.
  
     0.423
sce4087
WD40 repeat-containing protein.
  
     0.412
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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