Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0251Unnamed protein product; Family membership. (296 aa)    
Predicted Functional Partners:
sce0250
Unnamed protein product; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.998
sce7652
Acetyl-CoA acyltransferase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
 0.990
pcaF
Putative beta-ketoadipyl CoA thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
 0.989
sce5924
3-hydroxybutyryl-CoA dehydratase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.981
sce8632
enoyl-CoA hydratase/isomerase family protein; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.978
crt
Putative enoyl-CoA hydratase/isomerase family protein; Family membership.
 0.956
sce1998
Enoyl-CoA hydratase.
 0.952
scoB
3-oxoacid CoA-transferase.
  
 
 0.948
sce7554
Thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
 0.945
sce0048
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
 
0.933
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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