Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0265Hypothetical protein predicted by Glimmer/Critica. (312 aa)    
Predicted Functional Partners:
sce0266
Hypothetical protein; Predicted helicases.
       0.799
sce0267
Hypothetical protein predicted by Glimmer/Critica.
       0.799
sce0268
Uncharacterized protein conserved in bacteria.
       0.799
moaA2
Hypothetical protein predicted by Glimmer/Critica.
       0.598
cas1
Hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
       0.449
sce0262
Hypothetical protein.
       0.437
moaA1
Probable molybdenum cofactor biosynthesis protein A.
       0.437
sce0260
Uncharacterized protein conserved in cyanobacteria.
       0.432
sce0261
Hypothetical protein predicted by Glimmer/Critica.
       0.432
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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