Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0281Probable signal peptide protein. (230 aa)    
Predicted Functional Partners:
sce0280
Uncharacterized protein conserved in cyanobacteria.
 
     0.800
sce0550
Hypothetical protein/Zn-dependent dipeptidase (fragment); Function unclear.
  
     0.719
sce4882
Hypothetical protein; Coenzyme F420-dependent N5N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.715
sce8982
Transcriptional regulator, MarR family; Family membership.
  
     0.662
sce0708
Probable phenazine biosynthesis protein; Family membership.
  
     0.654
sce9197
Protein kinase.
  
     0.650
sce7451
Protein kinase; Family membership.
  
     0.645
sce8738
Protein kinase; Family membership.
  
     0.645
sce7314
Hypothetical protein predicted by Glimmer/Critica.
  
     0.638
ptsN
Nitrogen regulatory IIA protein.
  
     0.630
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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