Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0287Hypothetical protein. (452 aa)    
Predicted Functional Partners:
sce1098
Hypothetical protein predicted by Glimmer/Critica.
  
     0.769
sce8190
Hypothetical protein.
  
     0.762
sce6994
Hypothetical protein predicted by Glimmer/Critica.
  
     0.739
sce6216
Hypothetical protein.
  
     0.722
sce9166
Hypothetical protein.
  
     0.704
sce5594
Predicted ornithine cyclodeaminase, mu-crystallin homolog; Family membership.
  
     0.695
sce6983
Transposase; High confidence in function and specificity.
  
     0.679
sce4880
Putative membrane protein.
  
     0.678
sce2311
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats.
  
     0.676
sce7747
Putative protein phosphatase.
  
     0.659
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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