STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0302Hypothetical protein predicted by Glimmer/Critica. (408 aa)    
Predicted Functional Partners:
sce0301
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce0552
Putative secreted protein.
  
     0.724
sce8646
Hypothetical protein predicted by Glimmer/Critica.
  
     0.718
sce4410
Hypothetical protein.
  
     0.712
sce7161
Hypothetical protein.
  
     0.686
sce2833
Hypothetical protein.
  
     0.572
sce8803
Nicotianamine synthase, putative.
  
     0.564
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.555
sce3551
Cartilage oligomeric matrix protein; Family membership.
  
     0.504
sce0173
Uncharacterized conserved protein contains double-stranded beta-helix domain.
  
     0.498
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.