STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0318Hypothetical protein. (672 aa)    
Predicted Functional Partners:
sce0317
Hypothetical protein.
 
    
0.835
sce8075
Hypothetical protein predicted by Glimmer/Critica.
  
     0.728
cotH
Spore coat protein H; Family membership.
  
     0.707
sce7917
Putative penicillin-insensitive murein endopeptidase; Family membership.
  
     0.694
sce5384
Membrane protease subunits, stomatin/prohibitin homologs.
  
     0.670
CAN92074.1
Pseudogene.
  
     0.584
sce4584
Hypothetical protein predicted by Glimmer/Critica.
  
     0.582
sce0315
Hypothetical protein; No COG number.
 
     0.580
sce7839
Hypothetical protein predicted by Glimmer/Critica.
  
     0.572
sce5370
Fibronectin type III domain protein.
  
     0.556
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.