Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ndh1NADH dehydrogenase; High confidence in function and specificity. (447 aa)    
Predicted Functional Partners:
ndh2
NADH dehydrogenase.
  
  
 
0.903
hupD
Hydrogenase expression/formation protein hupD.
    
   0.717
sce0324
Transcriptional regulator; Family membership.
       0.636
glpD
GlpD protein; Family membership.
   
 
 0.549
glpA
Glycerol-3-phosphate dehydrogenase; Family membership; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.549
sly
FKBP-type peptidyl-prolyl cis-trans isomerase 2.
  
    0.545
sce0322
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
       0.519
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
   
  
 0.513
sce2646
Oxidoreductase; Specificity unclear.
  
  
 0.468
subI
Periplasmic sulfate binding protein; High confidence in function and specificity.
     
 0.445
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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