Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| atpD | rpoA | sce4444 | sce7936 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.895 |
| atpD | sce0330 | sce4444 | sce0330 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | Hypothetical protein. | 0.952 |
| atpD | sce6159 | sce4444 | sce6159 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | Histone deacetylase family protein. | 0.512 |
| atpD | sce9195 | sce4444 | sce9195 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | Histone deacetylase family protein. | 0.512 |
| rpoA | atpD | sce7936 | sce4444 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.895 |
| rpoA | sce0330 | sce7936 | sce0330 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Hypothetical protein. | 0.753 |
| sce0330 | atpD | sce0330 | sce4444 | Hypothetical protein. | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.952 |
| sce0330 | rpoA | sce0330 | sce7936 | Hypothetical protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.753 |
| sce0330 | sce1145 | sce0330 | sce1145 | Hypothetical protein. | Hypothetical protein predicted by Glimmer/Critica. | 0.813 |
| sce0330 | sce1760 | sce0330 | sce1760 | Hypothetical protein. | Hypothetical protein predicted by Glimmer/Critica. | 0.813 |
| sce0330 | sce4411 | sce0330 | sce4411 | Hypothetical protein. | Putative secreted protein. | 0.701 |
| sce0330 | sce6159 | sce0330 | sce6159 | Hypothetical protein. | Histone deacetylase family protein. | 0.840 |
| sce0330 | sce8225 | sce0330 | sce8225 | Hypothetical protein. | Putative SAM-dependent methyltransferase. | 0.702 |
| sce0330 | sce8398 | sce0330 | sce8398 | Hypothetical protein. | Hypothetical protein; No COG number. | 0.813 |
| sce0330 | sce8771 | sce0330 | sce8771 | Hypothetical protein. | Putative old protein; Family membership. | 0.705 |
| sce0330 | sce9195 | sce0330 | sce9195 | Hypothetical protein. | Histone deacetylase family protein. | 0.840 |
| sce1145 | sce0330 | sce1145 | sce0330 | Hypothetical protein predicted by Glimmer/Critica. | Hypothetical protein. | 0.813 |
| sce1760 | sce0330 | sce1760 | sce0330 | Hypothetical protein predicted by Glimmer/Critica. | Hypothetical protein. | 0.813 |
| sce4411 | sce0330 | sce4411 | sce0330 | Putative secreted protein. | Hypothetical protein. | 0.701 |
| sce6159 | atpD | sce6159 | sce4444 | Histone deacetylase family protein. | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.512 |
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