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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0343Peptidase T; Family membership. (417 aa)    
Predicted Functional Partners:
argB2
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
  
 0.664
sce0344
Protein kinase; Family membership.
 
     0.544
sce0702
Dipeptidase; Family membership.
 
  
 0.536
sce0943
Putative dipeptidase; Family membership.
 
  
 0.502
sce5830
Putative peptidase.
 
  
 0.499
argG
Argininosuccinate synthase; High confidence in function and specificity; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
 
 
 0.488
sce1547
N-acyl-D-amino-acid deacylase; Family membership.
 
    0.485
sce0341
Hypothetical protein predicted by Glimmer/Critica.
       0.434
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.
  
 
 0.430
astA
Arginine N-succinyltransferase; Family membership.
 
   
 0.425
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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