Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0349Hypothetical protein. (397 aa)    
Predicted Functional Partners:
sce0350
Two-component sensor histidine kinase; Family membership.
       0.689
glpT
Glycerol-3-phosphate transporter; High confidence in function and specificity.
  
     0.639
sce0351
4-alpha-glucanotransferase homolog; Family membership.
 
     0.618
sce4490
Putative secreted protein.
  
    0.615
sce2660
Unknown protein; Predicted phosphohydrolases.
  
     0.603
sce6146
Hypothetical protein; Predicted ATPase.
  
     0.588
sce6575
Putative membrane protein.
  
     0.556
sce7217
Unnamed protein product; Family membership.
 
  
 0.539
sce3507
Two-component hybrid sensor and regulator; Family membership.
  
  
 0.502
sce6826
Two-component hybrid sensor and regulator; Family membership.
  
  
 0.502
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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