Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0352Unnamed protein product. (498 aa)    
Predicted Functional Partners:
fecA
TonB-dependent receptor protein; Specificity unclear.
     0.796
sce2511
Hypothetical protein.
 
     0.630
sce3259
Periplasmic protein TonB links inner and outer membranes.
 
     0.603
sce0354
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.600
oar2
Oar protein; High confidence in function and specificity.
  
     0.579
oar1
Oar protein.
  
     0.569
sce6703
Hypothetical protein.
  
    0.525
sce0937
Putative exported protein.
  
     0.519
sce0353
Protein kinase; Family membership.
       0.494
sce4711
tonB family protein; Family membership.
  
     0.461
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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