STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0358Hypothetical protein; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (313 aa)    
Predicted Functional Partners:
crtC
Hydroxyneurosporene dehydrogenase; Family membership.
  
     0.701
crtB
Phytoene synthase; Family membership.
 
   
 0.641
crtI1
Phytoene dehydrogenase; High confidence in function and specificity.
  
    0.537
chiG
Methyltransferase; Family membership.
  
     0.496
crtD
Putative methoxyneurosporene dehydrogenase; Family membership.
  
    0.478
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.455
crtE
Farnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
  
 
 0.448
sce9147
Hypothetical protein.
  
     0.438
sce7168
Hypothetical protein.
  
     0.411
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.