Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0368Putative iron-sulfur protein, transmembrane protein; Family membership. (793 aa)    
Predicted Functional Partners:
nos
Nitric-oxide synthase, oxygenase subunit; Family membership.
  
  
 0.833
sce3300
Hypothetical protein; Putative phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit.
  
  
 0.736
sce7555
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; Family membership.
 
  
 0.697
sce0625
Electron transfer flavoprotein alpha-subunit; Family membership.
 
  
 0.678
sce0626
Putative electron transfer flavoprotein beta-subunit; Family membership.
 
  
 0.565
gap
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); High confidence in function and specificity; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.475
trmH
tRNA (guanosine-2'-O-)-methyltransferase; Family membership.
       0.437
ybbT
Putative ureidoglycolate hydrolase.
       0.425
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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