Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybbTPutative ureidoglycolate hydrolase. (176 aa)    
Predicted Functional Partners:
alc
Putative Allantoicase; Family membership; Belongs to the allantoicase family.
 
 0.999
ureA
Urease, beta/gamma subunit; High confidence in function and specificity.
 
  
 0.925
ureC
Urease alpha subunit; High confidence in function and specificity; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
    
  0.902
aceB
Malate synthase; High confidence in function and specificity; Belongs to the malate synthase family.
    
 0.848
aceA
AceA protein; High confidence in function and specificity.
     
 0.811
kdgA2
KDPG and KHG aldolase; High confidence in function and specificity.
    
  0.803
sce0063
Putative transcriptional regulator.
     
  0.800
sce0442
Serine-pyruvate aminotransferase; Family membership.
     
  0.800
sce0752
Putative glycolate oxidase; High confidence in function and specificity.
     
  0.800
kdgA1
KdgA1 protein; High confidence in function and specificity.
     
  0.800
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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