Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0376Hypothetical protein. (348 aa)    
Predicted Functional Partners:
sce0377
Hypothetical metallo-beta-lactamase family protein.
       0.781
sce0375
Hypothetical protein predicted by Glimmer/Critica.
       0.727
sce4282
Hypothetical protein.
  
     0.639
sce8705
Hypothetical protein predicted by Glimmer/Critica.
  
    0.567
sce2515
Hypothetical protein predicted by Glimmer/Critica.
  
     0.560
sce6556
Hypothetical protein predicted by Glimmer/Critica.
  
     0.543
sce6992
Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.533
sce4535
Hypothetical protein predicted by Glimmer/Critica.
  
     0.521
sce8043
Hypothetical protein predicted by Glimmer/Critica.
  
     0.521
sce6157
Hypothetical protein predicted by Glimmer/Critica.
  
     0.502
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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