Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0412Response regulator; Family membership. (760 aa)    
Predicted Functional Partners:
sce4190
Uncharacterized protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.890
sce7807
Histidine kinase; Unnamed protein product; Family membership.
  
 
 0.824
sce1730
Hypothetical protein; Family membership.
   
 
 0.762
sce4309
Hybrid sensory histidine kinase; Family membership.
 
 
 0.759
sce8150
Two-component response regulator; Family membership.
 
 
 0.719
sce3710
Sensory box/GGDEF family protein.
 
 
 0.718
sce3131
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.717
sce8397
Putative membrane protein (GAF and GGDEF domain).
 
 
 0.712
rimJ1
Ribosomal-protein-alanine N-acetyltransferase; High confidence in function and specificity.
  
    0.707
sce8626
FHA domain protein.
 
 
 0.700
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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