sce0426 protein (Sorangium cellulosum So ce56)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sce0426

Rhodanese-like domain-containing protein; Family membership. (145 aa)

Predicted Functional Partners:

sce0425

0.705

sce2387

0.676

sce8262

0.661

ybeY

0.572

rpsQ

0.533

sce0427

0.531

rplQ

0.516

rplU

0.498

sce2494

0.487

dnaA

0.483

Your Current Organism:

Sorangium cellulosum So ce56

NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dnaA	sce0426	sce0001	sce0426	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	Rhodanese-like domain-containing protein; Family membership.	0.483
rplQ	rplU	sce7935	sce7922	50S ribosomal protein L17.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
rplQ	rpsQ	sce7935	sce7954	50S ribosomal protein L17.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.995
rplQ	sce0426	sce7935	sce0426	50S ribosomal protein L17.	Rhodanese-like domain-containing protein; Family membership.	0.516
rplQ	sce2387	sce7935	sce2387	50S ribosomal protein L17.	Non-ribosomal peptide synthetase; Family membership.	0.902
rplQ	sce8262	sce7935	sce8262	50S ribosomal protein L17.	Non-ribosomal peptide synthetase; Family membership.	0.902
rplQ	ybeY	sce7935	sce0028	50S ribosomal protein L17.	Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.881
rplU	rplQ	sce7922	sce7935	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L17.	0.990
rplU	rpsQ	sce7922	sce7954	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.988
rplU	sce0426	sce7922	sce0426	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Rhodanese-like domain-containing protein; Family membership.	0.498
rplU	sce2387	sce7922	sce2387	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Non-ribosomal peptide synthetase; Family membership.	0.936
rplU	sce8262	sce7922	sce8262	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Non-ribosomal peptide synthetase; Family membership.	0.925
rplU	ybeY	sce7922	sce0028	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.840
rpsQ	rplQ	sce7954	sce7935	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	50S ribosomal protein L17.	0.995
rpsQ	rplU	sce7954	sce7922	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.988
rpsQ	sce0426	sce7954	sce0426	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Rhodanese-like domain-containing protein; Family membership.	0.533
rpsQ	sce2387	sce7954	sce2387	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Non-ribosomal peptide synthetase; Family membership.	0.803
rpsQ	sce8262	sce7954	sce8262	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Non-ribosomal peptide synthetase; Family membership.	0.798
rpsQ	ybeY	sce7954	sce0028	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.827
sce0425	sce0426	sce0425	sce0426	Hypothetical protein; Family membership.	Rhodanese-like domain-containing protein; Family membership.	0.705

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About