STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0436AMP-dependent synthetase and ligase. (502 aa)    
Predicted Functional Partners:
sce8261
Polyketide synthase type I; Family membership.
 0.992
sce1467
Putative Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; Family membership.
 
     0.972
sce7053
acyl-CoA synthetase; Family membership.
 
     0.970
sce3190
Polyketide synthase; Family membership.
 0.961
sce2530
acyl-CoA synthetase; Family membership.
 
    
0.928
sce3192
Polyketide synthase; Family membership.
 0.926
mxcE
(2,3-dihydroxybenzoyl)adenylate synthase; High confidence in function and specificity.
   
0.918
mxcL
Glutamate-1-semialdehyde 2,1-aminomutase; High confidence in function and specificity; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.875
sce0819
Polyketide synthase; Family membership.
  
 0.836
menE
o-succinylbenzoate-CoA ligase.
 
     0.835
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.