STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eriCChloride channel; High confidence in function and specificity. (610 aa)    
Predicted Functional Partners:
sce0444
Transcriptional regulator, MarR family; Family membership.
 
     0.684
sce5709
Hypothetical protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
  
   
 0.430
atpB
H(+)-transporting two-sector ATPase; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
     
 0.420
sce0542
Probable peptidase.
  
     0.413
guaB1
IMP dehydrogenase; Family membership.
     
 0.407
sce0124
Putative sodium:solute transport protein; Specificity unclear.
 
  
 0.407
sce1259
Unnamed protein product.
 
   
 0.401
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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