Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0453DNA repair protein; Family membership. (208 aa)    
Predicted Functional Partners:
sce0454
Hypothetical protein predicted by Glimmer/Critica; Belongs to the sigma-70 factor family. ECF subfamily.
       0.773
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.751
maf
Maf-like protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
  
 0.715
sce0490
Hypothetical protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.
 
  
 0.707
sce7288
Pribosyltran domain-containing protein; Unnamed protein product; Family membership.
 
    0.666
sce0452
Hypothetical protein predicted by Glimmer/Critica.
       0.570
sce8316
Competence protein.
 
  
 0.543
sce0455
Transcriptional regulator, Cro/CI family.
       0.514
sce0451
Hypothetical protein predicted by Glimmer/Critica.
       0.471
dprA
DNA processing chain A; High confidence in function and specificity.
   
  
 0.469
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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