Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0462Hypothetical protein; Restriction endonuclease. (142 aa)    
Predicted Functional Partners:
sce0461
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce4360
Protein of unknown function.
  
     0.762
sce2003
Uncharacterized protein conserved in cyanobacteria.
  
     0.690
sce0260
Uncharacterized protein conserved in cyanobacteria.
  
     0.666
sce6812
Hypothetical protein.
  
     0.642
sce7168
Hypothetical protein.
  
     0.622
sce3137
Hypothetical protein predicted by Glimmer/Critica.
  
     0.617
sce6578
Hypothetical protein.
  
     0.613
sce0198
Hypothetical protein.
  
     0.612
sce5676
Hypothetical protein.
  
     0.611
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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